Eugenio Marinelli
GPU/HPC Software Engineer & Researcher
Building GPU-accelerated systems for genomics and scientific computing, with a focus on parallel architectures, high-performance kernels, and scalable data-intensive workflows.
Experience
Where I've worked
Research Engineer · HPC & GPU Systems
EURECOM · Sophia Antipolis, France
Developing GPU-accelerated systems for large-scale genomic analysis, with a focus on BQSR acceleration, parallel kernel design, and end-to-end performance optimization across CUDA/SYCL backends.
Doctoral Researcher
EURECOM · Sophia Antipolis, France
Designed and implemented scalable systems for synthetic DNA data storage and computational genomics, including motif-based encoding/decoding workflows, error-tolerant retrieval methods, and accelerator-aware algorithms for data-intensive pipelines.
Research Intern
CERN · Switzerland
Contributed to scientific computing workflows in a large-scale research environment, working on C++ software components and performance-oriented tooling for high-throughput experimental data processing.
Research Intern
EURECOM · Sophia Antipolis, France
Worked on early research prototypes for GPU-accelerated data processing, contributing C++/SYCL implementations and performance experiments that later informed doctoral research directions.
Projects
Featured work
Publications
Research contributions
X-BQSR: Holistic Acceleration of Base Quality Recalibration for Scalable Genomic Analysis
E. Marinelli*, I. D. Kabadzhov*, R. Appuswamy
CMOSS: A Reliable, Motif-based Columnar Molecular Storage System
E. Marinelli, Y. Yan, L. Tattini, V. Magnone, P. Barbry, R. Appuswamy
Towards Migration-Free "Just-in-Case" Data Archival for Future Cloud Data Lakes Using Synthetic DNA
E. Marinelli, Y. Yan, V. Magnone, C. Dumargne, P. Barbry, T. Heinis, R. Appuswamy
Using Soft Information to Improve Error Tolerance of Motif-Based DNA Storage Systems
E. Marinelli, V. Magnone, M. C. Dumargne, P. Barbry, R. Appuswamy
OneJoin: Cross-Architecture, Scalable Edit Similarity Join for DNA Data Storage Using oneAPI
E. Marinelli, R. Appuswamy
XJoin: Portable, Parallel Hash Join Across Diverse XPU Architectures with oneAPI
E. Marinelli, R. Appuswamy
Digital Preservation with Synthetic DNA
E. Marinelli, E. Ghabach, T. Bolbroe, O. Sella, T. Heinis, R. Appuswamy
DNA4DNA: Preserving Culturally Significant Digital Data with Synthetic DNA
E. Marinelli, E. Ghabach, T. Bolbroe, O. Sella, T. Heinis, R. Appuswamy